rs243294240 SNP Detail

Summary

• ID
  rs243294240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127505359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAAGAG AGGGGAGAAA
  GTGGGTGGGC GAGGAGCGAG CATACTGCCT GCCAGGACTG TCTTCCCAGG CACGTGGAGA
  ATTTCATCTA GCAGATTGCT CTGCTCACTC CCCACCCCCC ACGCTGTCAA AAAGAGACTC
  ACTCAGCAAG GCTTGGCTGG ACCTCACCTT TCTCAGACTG TGTTCCCTTC TGGACCCCCA
  Y
  CCCCACCTCC CTGTCAGAAT TAATTCCTCC TACTCTTTAT GGGTGATGCT GTTTTCTATG
  TCTTTTAAAT AACACTTTTT AATGTATATG TGTTCTTGGG TGTGTGTGCA GGACTGCGGG
  TGCCCACGAA CCTGTGCATG GGTGCTAGGA ACTAAACCTA GGTCCTCTGC AGGAGCGATG
  GGTGCTCTTA ACCTCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189912	MGP_WTSI_10_127106546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243294240					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189912	MGP_WTSI_10_127106546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127505359 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	639 bp downstream
Rr369095	regulatory region 369095	488 bp downstream
Rr440993	regulatory region 440993	791 bp proximal
Rr440994	regulatory region 440994	933 bp proximal
Rr440995	regulatory region 440995	1868 bp proximal
Rr440996	regulatory region 440996	1953 bp proximal
Tssr96241	transcription start site region 96241	1081 bp downstream
Tssr99817	transcription start site region 99817	1880 bp upstream
Tssr99818	transcription start site region 99818	1825 bp upstream
Tssr99819	transcription start site region 99819	901 bp upstream
Tssr99820	transcription start site region 99820	607 bp upstream