rs243289857 SNP Detail

Summary

• ID
  rs243289857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22536654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGTCCT CAAGAAGGAG
  GCTCTCAGGT GAGGACCAGC TAGATTCCTC TGAAACCTCG ATCTAAAGAG TGTGGTGTCT
  TCAGAAAACG GGAATTACTT TCAAATTTTG GGAGGCAACC AAGGGCAACT ACAGTAGTCT
  GTATTGTTTG CGCAGCGGGT GTGTGTGTGT GTGTGTGTGT CTTGGACTCT CCTGACCAAT
  S
  ACTTGAAAAG AGGTTTCTCA TGCCTAGTTA CTGGGGTTTT TGTTGACTAT TAATATAACT
  ACAGTTGCAA TTTTATTTAA AGTCTATATT CATAAACATA TATAAATATT ATATGTAAAT
  CTAGATAAAT ATAAAAATAT GATTCCCTGT TTTGTTTTTT CAAACATCCT TGGTGTTAGT
  GCCCCCCCTC TATTTTCTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321765798	CHEV_6_22486655	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243289857					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22536654 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	754 bp proximal
Rr627120	regulatory region 627120	810 bp proximal