rs243275641 SNP Detail

Summary

• ID
  rs243275641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116202382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aattaagga agtgttccac agtctaggcc
  agtctgatgg aggcagttct caactgagag ttgctctctc cagataactc cagattgtat
  caggttgcca gaacactacc cggcaGACAC GTTCTCGAGC TCTTTCCCTG TGAGGCAGAG
  Y
  GCCCTGAAGC TTATCCCCGC TAAGCTGAAG CTGGTTTGCT TGAGCCAGTT GAAGACAGTT
  TGTTGTTACT GTGTCTTAGC AATAGGGAAT GGTGCCATCT TCAGACCCAT ATCACGCATT
  TACCCTTtgt cttagtcagg gtttctattc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321917404	CHEV_6_116175439	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243275641					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116202382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr58357	transcription start site region 58357			837 bp upstream
Tssr58358	transcription start site region 58358			1545 bp upstream
Washc2	WASH complex subunit 2			Intron
				Noncoding-Transcript-Variant