rs243239786 SNP Detail

Summary

• ID
  rs243239786
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48174294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGACACTGC CAACTAGCTG AGCTACCAGG
  GGTGGCCAGC CCTATGCCTG CCAGGACCCT CCCGCTAGCA TAAGGGACCT TTCAGGCCAG
  GCAGGCACAG GGACAGGCTG TCTTTCTAAA CCTTTTTCTT TTTACATCAT TTATTTATTT
  K
  GGGGGGGGGG catggctcaa gtgtgccggt cagaggagag tcaattccct tcttccaccg
  tttgggtttc tggggattga actcatcagg cttggtggca agtgccttta acccactagc
  cgtctcAGCC CTGTTTTCTA AATGTTGGAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406948	CHEV_17_48000318	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243239786					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48174294 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	390 bp downstream
Rr528160	regulatory region 528160	within coordinates
Rr528161	regulatory region 528161	1316 bp proximal
Tssr145062	transcription start site region 145062	1082 bp downstream