rs243225499 SNP Detail

Summary

• ID
  rs243225499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:41523715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGGAA TGGTGATTCC
  AAAGCCAACA GGACCTGCTT GCTTTTTCAG AAACTCTCTC AGCCCTGAAC CTTTCCAAAT
  ACAAATGATT TGTACCTGAT CCAGACAGTT ATCAGCAAAA TACTAATTCC ACCTCTCTTT
  ACTTTCCAGA GGATCTGAGA AATGTGACTC CACCCAAGGT CTCCTTGTTT GAGCCATCAA
  R
  AGCAGAGATT GCAAACAAAC AAAAGGCTAC CCTCGTGTGC TTGGCCAGGG GCTTCTTCCC
  TGACCACGTG GAGCTGAGCT GGTGGGTGAA TGGCAAGGAG GTCCACAGTG GGGTCAGCAC
  GGACCCTCAG GCCTACAAGG AGAGCAATTA TAGCTACTGC CTGAGCAGCC GCCTGAGGGT
  CTCTGCTACC TTCTGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070489	MGP_WTSI_6_41496780	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243225499					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070489	MGP_WTSI_6_41496780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41523715 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	70 bp downstream
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	Coding-NonSynonymous
Tssr1821	transcription start site region 1821	1891 bp downstream
Tssr1822	transcription start site region 1822	739 bp upstream
Tssr55946	transcription start site region 55946	1948 bp downstream
Tssr55947	transcription start site region 55947	1764 bp downstream
Tssr55948	transcription start site region 55948	686 bp downstream
Tssr55949	transcription start site region 55949	475 bp downstream
Tssr55950	transcription start site region 55950	204 bp downstream
Tssr55951	transcription start site region 55951	516 bp upstream
Tssr55952	transcription start site region 55952	563 bp upstream
Tssr55953	transcription start site region 55953	599 bp upstream
Tssr55954	transcription start site region 55954	647 bp upstream
Tssr55955	transcription start site region 55955	672 bp upstream
Tssr55956	transcription start site region 55956	713 bp upstream
Tssr55957	transcription start site region 55957	1001 bp upstream
Tssr60579	transcription start site region 60579	1924 bp upstream