rs243204156 SNP Detail

Summary

• ID
  rs243204156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30910624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCCGGC ACTTGCGGGC
  ACTTGCAGGG CGGTTGAACC CTGCCCGGGC GCACCGGGTC ACTGCTGCTC TGCAAGGGCG
  GTTGGTACTG GAGCGGGGCG GCTGGCTCGG GGACCCGCCC TGGGGAGCGA GGCTTAAGCA
  ACTTCTCTCC TTCTGCGGTG GTGGCCAAAC GGTGGCAACC CTCCACCATG TCCCTGTTCC
  M
  CTTCGTCTCC AACTTGTGCA AATGATCTGA TTAGGGCGTT GTTCCTTAGA TCCCAGAGGT
  AGATCATGCC CACAGTGACA GAGGACACGC GAAAAGTGGT GCTTTATATT TATGAATGTA
  TGCTAGCACA TATTGGCATG ACCTATACCT AGCATTTCCT TGTGAGTCAA GTTTTTAAGT
  TAACAGGTTA CCTCCTATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320694179	CHEV_3_30755397	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243204156					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30910624 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	106 bp upstream
Gpr160	G protein-coupled receptor 160	Intron
Rr574830	regulatory region 574830	1664 bp distal
Rr574831	regulatory region 574831	565 bp distal
Rr574832	regulatory region 574832	450 bp distal
Rr574833	regulatory region 574833	118 bp distal
Rr574834	regulatory region 574834	within coordinates
Tssr28695	transcription start site region 28695	717 bp downstream
Tssr28696	transcription start site region 28696	473 bp downstream
Tssr28697	transcription start site region 28697	468 bp downstream
Tssr28698	transcription start site region 28698	449 bp downstream