rs243177803 SNP Detail

Summary

• ID
  rs243177803
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134343786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GATTCTCTCC CCACCGCCCC
  M
  CTCTAGGCCG AGGCGAAGCG CCGCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321695459	CHEV_5_134790802	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243177803					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134343786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	within coordinates
Gm71534	predicted gene, 71534	within coordinates
Gm71761	predicted gene, 71761	1157 bp upstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr399401	regulatory region 399401	1165 bp downstream
Rr621988	regulatory region 621988	1168 bp distal
Rr621989	regulatory region 621989	667 bp distal
Rr621990	regulatory region 621990	120 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	791 bp proximal
Tssr1657	transcription start site region 1657	24 bp downstream
Tssr49086	transcription start site region 49086	1268 bp downstream
Tssr49087	transcription start site region 49087	1236 bp downstream
Tssr49088	transcription start site region 49088	941 bp downstream
Tssr49089	transcription start site region 49089	14 bp upstream
Tssr53629	transcription start site region 53629	1713 bp upstream
Tssr53630	transcription start site region 53630	1112 bp upstream
Tssr53631	transcription start site region 53631	508 bp upstream
Tssr53632	transcription start site region 53632	480 bp upstream
Tssr53633	transcription start site region 53633	459 bp upstream
Tssr53634	transcription start site region 53634	433 bp upstream
Tssr53635	transcription start site region 53635	384 bp upstream
Tssr53636	transcription start site region 53636	361 bp upstream
Tssr53637	transcription start site region 53637	256 bp upstream
Tssr53638	transcription start site region 53638	211 bp upstream