rs243138905 SNP Detail

Summary

• ID
  rs243138905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGGTGAT TTTGGGGTAT
  TGCCTCTCCT GAGTCAGAAC GTGGGGGAGT CCTCACGTTG TGGGTCTTTC AAGTCCAGCA
  TTGTATATAT TCAAAGTCAA TAAGCAGGAT TAATCACAGT CCCAAAGACT TCTAGAGCTG
  TGTGTCACAA AGCTCACTTC AGGTTCTACC TGAGCTGAAG CTTGTTACAT AACCATTTGA
  Y
  CTTTCAATAG CAAATTTCAC GAACATACTG AGAGCTGTTT GTGTGCCAGG TTGTGTGCCG
  GGTTCCCTCC TTCCCTTGAA GGCAGTCTTG GGAAGGATGA GTCCAGGTGA CATACCCAAC
  AAGGGACTTG GAGAACGAGC CACCGGCAGT GGGAACACTG GGAAGGGAGC CCTTCATCTT
  CCCTGGGCAG GAGGGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771948	CHEV_3_54373803	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243138905					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477302 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	840 bp upstream
Rr576808	regulatory region 576808	1487 bp distal
Rr576809	regulatory region 576809	800 bp proximal
Tssr29130	transcription start site region 29130	16 bp upstream