rs243119603 SNP Detail

Summary

• ID
  rs243119603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAAGGT TGGTTTTGTT
  TTGTTTTTAA GATTTTATTT TAGCTTATTT TTATCATGTA TATGGGGTAG GGGGGTGGGG
  CAGAGGATGT GTACACATTA GAGTGCACAT GTCAAAGTCC AGAAGAGGGT AACAGATACC
  CTGGAGCTGA AGTTAGAGAT CGTGGTGAAC CTCCTGACAT GGGTGACATT TCCCACAGCT
  W
  GGTGCAAGAG AATGAGAAGC TAGACAGTAT TCTGAACAGC ACAGCTGCAC CTGTGTCTCA
  AACAACAACA AAAAGTCACA AGTGAAACTT TCAGATCTAC TTTTTTAGGT TGTTTTTTTT
  TTTTTTTTTT TGAGACAGGA TCTTACACTG TACCTAGCTG AAACTGGCAC GGGATTGACT
  GTGTAGCCCA GACTGGTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100048	CHEV_4_44086753	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243119603					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	814 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1114 bp distal
Rr591150	regulatory region 591150	617 bp distal
Rr591151	regulatory region 591151	884 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1324 bp upstream
Tssr41483	transcription start site region 41483	1188 bp upstream
Tssr41484	transcription start site region 41484	1150 bp upstream
Tssr41485	transcription start site region 41485	860 bp upstream