rs243105223 SNP Detail

Summary

• ID
  rs243105223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90421526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTC ACGGTTGGCC TCGGCCTGAC
  K
  TCGGAACAGA TTCTCGACAG AAGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837934	CHEV_3_90318141	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243105223					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90421526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13466	CpG island 13466	within coordinates
Rr375350	regulatory region 375350	150 bp downstream
Rr580384	regulatory region 580384	within coordinates
Rr580385	regulatory region 580385	237 bp distal
Rr580386	regulatory region 580386	120 bp distal
Rr580387	regulatory region 580387	49 bp proximal
Rr580388	regulatory region 580388	159 bp proximal
Rr580389	regulatory region 580389	163 bp proximal
Rr580390	regulatory region 580390	227 bp proximal
S100a1	S100 calcium binding protein A1	mRNA-UTR
S100a13	S100 calcium binding protein A13	133 bp upstream
Tssr30209	transcription start site region 30209	699 bp upstream
Tssr30210	transcription start site region 30210	765 bp upstream
Tssr34242	transcription start site region 34242	31 bp downstream
Tssr34243	transcription start site region 34243	137 bp downstream
Tssr34244	transcription start site region 34244	151 bp downstream
Tssr34245	transcription start site region 34245	186 bp downstream