rs243101274 SNP Detail

Summary

• ID
  rs243101274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTAATA GGAACTTTCC
  TTTTCCATCA AACTGAGGAG TGGTGAGGTA AACTGCTCTT GGGACTGAAA TAGCTCTGTC
  TAGTGTCTGG TAATGTACTG AACACATACA TAGCGCAGTT ATAAGAAATG TATGAGACCT
  TCCTTGTCTT TGCTCTGTGT GTAAGACGTG TCCCCTGCAC CTGTATAGTG GCTGTGGCTT
  R
  AATGACTCTC AAAGTTACTT CTATACATAC CTCTATGTCC ATTATCGAAT CAGCTCTTCT
  GACAATTGGA AAGAACTCCT ATTCTAAAAG GCAATGGATT CCTTAGATCC TTTCACCTTA
  TTGTATCCTT GTAGGGAAAT GCAAAATTTT AGAAACGATT CTAATAAACG AATCTTCCTA
  AGTAAATCCT TTTCAATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526380	MGP_WTSI_6_17412921	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243101274					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526380	MGP_WTSI_6_17412921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	394 bp proximal
Met	met proto-oncogene	879 bp upstream
Rr626799	regulatory region 626799	389 bp proximal
Rr626800	regulatory region 626800	553 bp proximal
Rr626801	regulatory region 626801	596 bp proximal
Rr626802	regulatory region 626802	1128 bp proximal
Tssr55050	transcription start site region 55050	511 bp upstream
Tssr55051	transcription start site region 55051	634 bp upstream
Tssr55052	transcription start site region 55052	828 bp upstream
Tssr55053	transcription start site region 55053	905 bp upstream
Tssr55054	transcription start site region 55054	964 bp upstream
Tssr55055	transcription start site region 55055	980 bp upstream
Tssr55056	transcription start site region 55056	1006 bp upstream
Tssr55057	transcription start site region 55057	1171 bp upstream
Tssr55058	transcription start site region 55058	1211 bp upstream
Tssr55059	transcription start site region 55059	1250 bp upstream