rs243093564 SNP Detail

Summary

• ID
  rs243093564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105173690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGGCTG GCTTTGAATT
  CACCATATGC CTAAGGCTAG CCTTAGGCTT CCAGCCTTAC CTCCAAGTGC TGGAATTGCG
  GGTGTGCACC ACCACATTGG GCTTTTAGGT TATTTTGAAG AGCACAAAAT TTCATTCCAA
  ATATAGTTTT GGTTATTTAC AGCTTGTGCT TAGACAAATT ACCTTTTCTG TGCTCCACTT
  Y
  CTTCACTTGT TAAACAGAGA TTATTTTACT CAAGCTCTTG AGACAGGTTA TGAAGACCAA
  ATGGAGATTC ATGTCTATGA AGTGTTGAGA ACAGCTGCTG GCCTCTTGCA AGCCTGTATT
  GGTCGTACAG TGCATTGGTT ATAATAATAC AGCAGAATCA CGTGATGACC TGCTTCCTCC
  AGGCTGAGAG GCTGCCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243586	CHEV_4_104989098	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243093564					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105173690 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596595	regulatory region 596595	1055 bp distal
Rr596596	regulatory region 596596	92 bp proximal
Rr596597	regulatory region 596597	566 bp proximal