rs243084062 SNP Detail

Summary

• ID
  rs243084062
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53101231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGGAGGG CACCCATGTT
  TGATTGCCAC TGACTTTCCA CCTATGGCAC TGTGGCTTCT TGGTCCCCTT GTACCTTAGG
  TTGTTCCAGT GAGGAGCTGG CTGGCATCCA AAGGGCAGAT CATGCTGTCT CCTTGCCTTT
  TTAAAAAATA TCCCTTGTGT ACGTGTGTGT GTGTGTGTGT GCTCATGTGT GTGTGTACCA
  C
  AACATGTGTG TGGAAGTCCA GGACAACCTT ATAAAGTCAG TTCTCTCCTT CCATCGATAC
  AGCGATTCTG TGGATCAATT GCAGGCCACC AGGCTTGTGT GGCAAACACT TTTGCCCACT
  TAGCCATCTT GCTGTGCCAC TGCCTCCTCT TTTTGATACA TTTGTAAGAT AGCACTATCT
  TCGTGTCTGT ATTGATATGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766873	CHEV_3_52997732	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243084062					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53101231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			1805 bp proximal