rs243069180 SNP Detail

Summary

• ID
  rs243069180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100587284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATCTGAG ATGGGGTTTC
  ACAGTGGGGT TTCACTGTGT AGACCAGGCT GGACCAGAAC TTGTTATCTT GTCACAACAT
  CCTGAGTTCT GAATGTAACA AGCATGAATT GACCAGTTGC CAAATCACAG GTGTCTTAGT
  TTTGTGGTTG ATGTGGAAAT TCTGGAGGCC CAGGCATGTT GAGCCAAGTT TTGCTTCTCT
  K
  TATGGTTTGG GATTGAGAGA AAGCTTCAAC CATGGCCCCA GTGACAAACA CATTGCAGCC
  AGTGCCCCAG GGCCTCCTCT GGGGCCTCAG ACTCTCTGCC TCTGCCACTT GGCTGTGAGC
  CTCTGTAAGA GATCGTGGGG TTGCCGCCGG AACTTCTGTT GTGTGAAGTA GAAGAGAATG
  GGGTCCAGAA CACTGTTGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372529614	MGP_WTSI_7_108086591	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243069180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372529614	MGP_WTSI_7_108086591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100587284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	118 bp proximal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	mRNA-UTR
Tssr68182	transcription start site region 68182	803 bp upstream
Tssr73796	transcription start site region 73796	133 bp downstream
Tssr73797	transcription start site region 73797	205 bp downstream
Tssr73798	transcription start site region 73798	354 bp downstream
Tssr73799	transcription start site region 73799	722 bp downstream
Tssr73800	transcription start site region 73800	751 bp downstream
Tssr73801	transcription start site region 73801	820 bp downstream
Tssr73802	transcription start site region 73802	950 bp downstream
Tssr73803	transcription start site region 73803	1029 bp downstream
Tssr73804	transcription start site region 73804	1051 bp downstream
Tssr73805	transcription start site region 73805	1875 bp downstream