rs243066088 SNP Detail

Summary

• ID
  rs243066088
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151898291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAATGGT AAAAGGAGAT
  TCTCAAAGGC TACTGAGCTC ACTGAGTCCT GATCTCAGAA GGCAAGAAAA AAAGTATGGC
  TGAGGGAAAG GGCAGCTGTC ATGCTTCCTC TTCAGCCACA TAGTAAAATT TCCAAAAGAA
  ATAGTTAACT AAAACAAACT CAGTCATTGT TCCAACTAGG TGGCCATTTT GGGTTAGAGA
  G
  GGAGAGGGAG GGCGGGAGGG CGGGGGGGGG GGGGGAGGAA GAGAGGGAGG GAGAAAGAGA
  GAGAGAGAGA GAGAGAGATC TTGTTCTCCT GGCACAATAT TAACTGTTTA TAATTAAGCT
  AAAAACTTGT TCTGGTATTT TATGACATCA GGGAAATTCT TTCCTCTCTA GGCAGATTGC
  CAAAAACAAC TAGAAGCTAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028367	CHEV_3_151855618	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243066088					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151898291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1047 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			1319 bp upstream
Gm64624	predicted gene, 64624			within coordinates
Rr587481	regulatory region 587481			1113 bp distal
Rr587482	regulatory region 587482			807 bp distal
Rr587483	regulatory region 587483			315 bp distal
Rr587484	regulatory region 587484			1181 bp proximal
Tssr36163	transcription start site region 36163			1069 bp downstream
Tssr36164	transcription start site region 36164			1093 bp downstream
Tssr36165	transcription start site region 36165			1119 bp downstream
Tssr36166	transcription start site region 36166			1149 bp downstream
Tssr36167	transcription start site region 36167			1179 bp downstream