rs242980662 SNP Detail

Summary

• ID
  rs242980662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150134408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTATTCTA ACGTTGAAGC AGAGGGGTTT
  CCCCCGGGGT GGGTGAGAGT GCCCCTGCTG GCAGGGGCTC TGCCTAGCCT GAAAGCTTTA
  TTGTACTCCG TGTAGCAGGG GCCAACCCAG GTCCGTCCGA GTCCCGTCCC GTCCCCCCCC
  M
  CCCCCCCCCA AGGCAGCTCA AGGACAAGTT TATTAGGATG TGAGAGAAAA CAACGTGTCA
  GGCAAGCAGC ACGTGTTGCC GAGGGCCCTG GGAAGAGGAC ACGGGAGAGA AGAAGAGAAA
  GCCATGCCTT TTGCAATGGA GGTGGGCAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321427748	CHEV_4_149424060	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242980662					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150134408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	630 bp distal
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	838 bp upstream
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	1702 bp distal
Rr605156	regulatory region 605156	937 bp distal
Rr605157	regulatory region 605157	348 bp distal
Rr605158	regulatory region 605158	1806 bp proximal
Tssr40363	transcription start site region 40363	1707 bp downstream
Tssr40364	transcription start site region 40364	1659 bp downstream
Tssr40365	transcription start site region 40365	760 bp downstream