rs242975529 SNP Detail

Summary

• ID
  rs242975529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121163392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTTGAC CCAGTGATGT
  CATCTATGAT GTCACTACCG CCTCATCGGC ACTGCCTGTT TTTGGTCTGA ATGAGATGTG
  CCTTATAAGT CCCAAGCCTG TGACTACTGG GCTCACAGTT GGTGGCTGTT GGAGGAGAAT
  TAGAAGGTAT GGCCTTGCTG GAGGAAGTAT GTCACGGATG TGTGTGTGTG TGGGGGGGGG
  K
  GGGGGTTACA AGTGACCCAT GCCATTTTCA GCTGCTCTGT TTCCTGCCCG TGTTTCCTGC
  TCGTGCTCTG AGATGTGAGC ACTCTGCTGT TACTCCAGCT GCCTTGGTCT GCTTCCTGCA
  CGGCTTCCCT GCTGTGATGG TGACAGGCAC TTAGCCCTCT AGGGACCATA CACCCAAAAA
  TGAGCCCTTT CTTCTTGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359472352	MGP_WTSI_3_121072661	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242975529					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359472352	MGP_WTSI_3_121072661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121163392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	718 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	within coordinates
Rr397974	regulatory region 397974	446 bp upstream
Rr584057	regulatory region 584057	124 bp distal
Rr584058	regulatory region 584058	within coordinates
Rr584059	regulatory region 584059	465 bp proximal
Rr584060	regulatory region 584060	1571 bp proximal
Tssr31438	transcription start site region 31438	145 bp downstream
Tssr31439	transcription start site region 31439	84 bp downstream