rs242950130 SNP Detail

Summary

• ID
  rs242950130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137522605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGTGGG AGAGGAAAGA
  GCTGACTGGG GAGACCAGAG AGGCTTGGAG GGTGAAGGGC ATACTGGGGG GGGGCTCTCC
  TTAATCTCCT GGGCTGTGGA GAATGGGCAA CAGGGTTCAA TGCCTAATGT CATTGCCTAC
  ATTGTCTAAA ACTCTCTGTC CCTATTTGTA GTCTGTCAGG TGTCAGAGCA GTCCTTATCC
  R
  GCATTTAATA AACAGTTGCC CTAATTCTCA ACCAGACTGA GAATCTGAGG CTGCCTGAGG
  GGGGGTCTTT GAATTCTTCT TGGAGCCAAA CGTTCTTTCA GGCCTGAGAA TAATCCCTCT
  GTTATATGTA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTATG ATTTTGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363423844	MGP_WTSI_4_137351209	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	A	G	G	A	G	G	A	A	A	A	A	A	A	G	G	G	G	A	G	G	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242950130					SNP	A	A	A	G	G	A	G	G	A	G	G	A	A	A	A	A	A	A	G	G	G	G	A	G	G	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363423844	MGP_WTSI_4_137351209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137522605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Cpgi15139	CpG island 15139			238 bp proximal
Rr602723	regulatory region 602723			449 bp distal
Rr602724	regulatory region 602724			103 bp proximal
Rr602725	regulatory region 602725			1014 bp proximal
Rr602726	regulatory region 602726			1080 bp proximal
Rr602727	regulatory region 602727			1149 bp proximal
Tssr1350	transcription start site region 1350			991 bp downstream
Tssr44149	transcription start site region 44149			1014 bp downstream
Tssr44150	transcription start site region 44150			1056 bp downstream