rs242923846 SNP Detail

Summary

• ID
  rs242923846
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28075976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAAAA AAGTCCTCTA
  TCAAGTCCGC CCAAGCTGTC TGCGCAGGGT TCAGAGTCCC CTAGGGCCCC CGGCTTTGGG
  TGACCCCTGA CCCTGGCCGC CTGGGCTCGC CTTCCCGCAC ATTCCGTCCT CGCCGCCCCG
  CCCCACCCCG CCCTCCTTCC TTGGCCCTGT GGGGACGGAA ACATCCCGTT CCTGCCCGAG
  M
  TGGGTCAAGA GCCGGAGGGA CAGGACCAGA GCACCCCTTA CGCCAGAACT AGCTCTCCTT
  GTTCCTACTG GGTGACCTCA TCTCGCCACG CCTCCTCAGG TGAACACCCG GGCTGGTAAC
  GTCACTTCCT GCCAGGTAAG CGCCCCCAGG CAGCACTGCT CACGGAAAGG TCTGGAGGTC
  AGTTTACCCA CCATCACAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858503	MGP_WTSI_7_29161570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242923846					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858503	MGP_WTSI_7_29161570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28075976 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	within coordinates
Gm73803	predicted gene, 73803	979 bp upstream
Rr380568	regulatory region 380568	within coordinates
Rr400209	regulatory region 400209	619 bp downstream
Rr644238	regulatory region 644238	489 bp distal
Rr644239	regulatory region 644239	113 bp proximal
Rr644240	regulatory region 644240	1382 bp proximal
Rr644241	regulatory region 644241	1939 bp proximal
Tssr65460	transcription start site region 65460	759 bp downstream
Tssr65461	transcription start site region 65461	within coordinates
Tssr65462	transcription start site region 65462	175 bp upstream
Tssr65463	transcription start site region 65463	935 bp upstream
Tssr65464	transcription start site region 65464	1445 bp upstream
Tssr71489	transcription start site region 71489	967 bp upstream
Tssr71490	transcription start site region 71490	419 bp downstream
Tssr71491	transcription start site region 71491	523 bp downstream
Tssr71492	transcription start site region 71492	579 bp downstream
Tssr71493	transcription start site region 71493	623 bp downstream
Tssr71494	transcription start site region 71494	670 bp downstream
Tssr71495	transcription start site region 71495	715 bp downstream
Tssr71496	transcription start site region 71496	1066 bp downstream
Tssr71497	transcription start site region 71497	1314 bp downstream
Tssr71498	transcription start site region 71498	1372 bp downstream
Tssr71499	transcription start site region 71499	1465 bp downstream
Tssr71500	transcription start site region 71500	1498 bp downstream
Tssr71501	transcription start site region 71501	1516 bp downstream
Tssr71502	transcription start site region 71502	1556 bp downstream
Tssr71503	transcription start site region 71503	1592 bp downstream
Tssr71504	transcription start site region 71504	1620 bp downstream
Tssr71505	transcription start site region 71505	1636 bp downstream
Tssr71506	transcription start site region 71506	1655 bp downstream
Tssr71507	transcription start site region 71507	1696 bp downstream
Tssr71508	transcription start site region 71508	1718 bp downstream
Tssr71509	transcription start site region 71509	1756 bp downstream
Tssr71510	transcription start site region 71510	1835 bp downstream
Tssr71511	transcription start site region 71511	1874 bp downstream
Tssr71512	transcription start site region 71512	1929 bp downstream
Zfp36	zinc finger protein 36	232 bp downstream