rs242893482 SNP Detail

Summary

• ID
  rs242893482
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83751465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGGCA GTCTGAGAAA
  GGCTTCGGTT GTCGGTGATG AAAGGTCTAA TTGCTATCCC AACCACACCC ACAGACTGAG
  CCAATGAGCT GGCTGTAGCC CTGTCTTTAC CACAAACTAC AACCCCAGGC TACGTTGAGA
  GTGAAAGTAG CTGCAGACTT TAGGCGACTG AAAGGTGAAC TTTTCTGTCC AAAGGTATCC
  T
  CCCCCCCCCC CCCCCCCGCA CCTCAGTCTT CCTCACAGCC TCTCTAACAG GGACAGGGAC
  CAAGTCTTCA GGAAAAGAAA CCTCCATGAG GGAAGAGAAA GGGCTGGACA TTCTCCCTTA
  GGACAAATGA CACTGAGTGG AGAGAGGGCA ATAGCTAACT AAGCGTTACA AACTGTCCTT
  ATTGTCCCTA TAAGTTCTAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	PL/J	QSi5/Ianm	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss369039048	MGP_WTSI_6_83724477	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	PL/J	QSi5/Ianm	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs242893482					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039048	MGP_WTSI_6_83724477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83751465 () rs orientation: forward

Symbol	Name	Function Class
Gm52907	predicted gene, 52907	1402 bp upstream
Rr632937	regulatory region 632937	37 bp distal
Rr632938	regulatory region 632938	1186 bp proximal
Rr632939	regulatory region 632939	1320 bp proximal
Rr632940	regulatory region 632940	1413 bp proximal
Rr632941	regulatory region 632941	1718 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1445 bp upstream
Tssr57375	transcription start site region 57375	1155 bp upstream
Tssr61705	transcription start site region 61705	1077 bp downstream
Tssr61706	transcription start site region 61706	1092 bp downstream
Tssr61707	transcription start site region 61707	1099 bp downstream
Tssr61708	transcription start site region 61708	1127 bp downstream
Tssr61709	transcription start site region 61709	1186 bp downstream
Tssr61710	transcription start site region 61710	1263 bp downstream
Tssr61711	transcription start site region 61711	1284 bp downstream