rs242879090 SNP Detail

Summary

• ID
  rs242879090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62443601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAATTTC CATCCGCTTC CACGGCATCC
  CGGACGTTCC ACTCCAGGCT TGTTTCTCTA CTACACATCG CGAGAGCTTT CGCACCACAC
  TAAGTTTGAC TCTCTGAGGT TTCCGTCGAT TCTCCCAGCG TGCCGTTCGC CGCTGCTAGG
  Y
  AACCGTGTGG CCTGGTGCCT AGCTTGGAAA GGGTAGGCGT AGACTGAGCC GGGAGAGGCG
  GGACTCGGAC TGCCAAGTGG GCGGGGCTCT CTATAAGAGG TGGGCGGGGC CAAAGCTTTA
  ACGCGCTTTC GCAATCTCAG CATTGTCTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142576	CHEV_4_62186398	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242879090					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62443601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933430I17Rik	RIKEN cDNA 4933430I17 gene			mRNA-UTR
				Noncoding-Transcript-Variant
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)			296 bp upstream
Rr367636	regulatory region 367636			31 bp downstream
Rr593339	regulatory region 593339			562 bp distal
Rr593340	regulatory region 593340			within coordinates
Rr593341	regulatory region 593341			16 bp proximal
Tssr37493	transcription start site region 37493			254 bp upstream
Tssr42018	transcription start site region 42018			952 bp upstream
Tssr42019	transcription start site region 42019			559 bp upstream
Tssr42020	transcription start site region 42020			514 bp upstream
Tssr42021	transcription start site region 42021			284 bp upstream