rs242874856 SNP Detail

Summary

• ID
  rs242874856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97952114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT TTTCCTTTTA TTGTGGGGTA
  Y
  ATGTCCAGAA ATACAGACCG TGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320844191	CHEV_3_97848721	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242874856					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97952114 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581622	regulatory region 581622	795 bp distal
Rr581623	regulatory region 581623	within coordinates
Rr581624	regulatory region 581624	769 bp proximal
Tssr30816	transcription start site region 30816	289 bp upstream