rs242874092 SNP Detail

Summary

• ID
  rs242874092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141168482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGATG AAACTGTGAC
  AGTCAGTGAC ACTAGACACA ATGCTGATAC AAAGGCAGTG TGTAGCTGCC AGAGGCATTG
  CTGGAGCTGC GCTGCTCACA GGTGCTTTTA GGGCCCCTGC CCCTATACTC TCTTCTTTCC
  TCTTCATAGC CACACATCTT TCTCAAACCA TGCTCCTGCC CTCTTTAGGC TGAATCTCAG
  Y
  ATTGAACTAC TTTCCTTTGC CTTATCGCTG ACTGGTGCTT TTAAGGCACT AATTTCATGC
  GGTATCGACT GCTGAGGGCT TCAAAGATCC AAGCAAGACG ATGTGATCAT TTTAACCTTC
  CTCATCTGTC CTAGACGTTG AAGATTCCTC CCAGGTGAAC CTTTTTGTCA ACCAGCCAAC
  CAATCCTGAC TGAATACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992360	CHEV_3_141125685	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242874092					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141168482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1919 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	within coordinates
Tssr1065	transcription start site region 1065	1974 bp upstream
Tssr35916	transcription start site region 35916	1854 bp downstream