rs242866607 SNP Detail

Summary

• ID
  rs242866607
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53338396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTCTCC CCTCTTCTCC
  ACTCTTCCCC CTTCCCCTCT CCTCTCTCCC CCCTCCCCCC TCCCTCCTCC CCTCTCCTCC
  TCTCTTCTCT CCTCCCTCCT CCCTTCCCTT CCCTTCCCTT CTCTTCTCCT CCCCTCCCCT
  CCCTTCTCCT CCCCTCTCTT TCCCAAAATG GAAAGGGTTC AGTGAAAAGA GCCCCTTCCT
  M
  CATTAAAAAA ATAAAAAGAA AGAAAAGAAA AAGTCGCTTC CCATATCTCA GTGCAACTTC
  AGGCCTCACA TACTTTGTCC TTGATCCCGG GAGGAATCTT GTTAAGTGTT CTTCAAAGTG
  CAAAAAGAAC TAATTGCATG TCCCTCTTTC TCCCTGATCA TTAAATAAAG ACACTAGGAA
  GCCAAACACA GTTTACTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361549393	MGP_WTSI_4_53351268	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242866607					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361549393	MGP_WTSI_4_53351268	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53338396 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	42 bp upstream
Rr592236	regulatory region 592236	205 bp distal
Rr592237	regulatory region 592237	819 bp proximal
Rr592238	regulatory region 592238	1313 bp proximal
Tssr37294	transcription start site region 37294	1721 bp upstream
Tssr41768	transcription start site region 41768	1421 bp downstream