rs242833684 SNP Detail

Summary

• ID
  rs242833684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:42950092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGCCGG CGGGCAGGCG
  ACTCCTGTCC CGAGTGGAGG CGGCGGAGCC GGAGCCGGGG GAGGGGGCAG CGGCTGATAG
  AAGGACCGCG GCGGCGCCCG CAGCTCCTCA CCGGTGAGGG CGCTGAGCGA GGACTCGGGG
  GTCCCGGGAG TGGGGCGTCG AGAAGAGAGG TCCTGGTATG GGGGGTTGGG ACACCGTGGG
  Y
  CCATAGTCTC CTCTGTCGTA GGGGTGAGGG GCCTGGGAGC TCGGGGTCTG CCAGGTGCTG
  GGTATCTGCG ACAAGGGTCG GGTTGGGTCG GGTCGGATTG GGTTGCGCCG GGCGGAGGCG
  TTTCTGAGCA GGCCAGCCAG CCAGCTGGGG TGACATCACC GACCCCCCTC CCCCGCGCGA
  ACCCCCTTCC TTCCTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361308111	MGP_WTSI_4_42962964	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242833684					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308111	MGP_WTSI_4_42962964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42950092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14174	CpG island 14174			within coordinates
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm69502	predicted gene, 69502			475 bp downstream
Rr398224	regulatory region 398224			172 bp downstream
Rr590880	regulatory region 590880			1851 bp distal
Rr590883	regulatory region 590883			1313 bp distal
Rr590884	regulatory region 590884			215 bp distal
Rr590885	regulatory region 590885			within coordinates
Rr590886	regulatory region 590886			315 bp proximal
Tssr36908	transcription start site region 36908			169 bp downstream
Tssr36909	transcription start site region 36909			277 bp upstream
Tssr36910	transcription start site region 36910			359 bp upstream
Tssr36911	transcription start site region 36911			389 bp upstream
Tssr41383	transcription start site region 41383			565 bp upstream