rs242809820 SNP Detail

Summary

• ID
  rs242809820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138233462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACACGCC GTGTGGGGGC
  CCGGGCACCG GGGCGGTGGG GGGAGGGGCG CCGCGCGGGG CCGCGATGCG GCGGGCGGAG
  GGCGGCTCGG GACACGGGCG CGGGGATCGG CGTGGGGTCC CGGGGTCTCG GGGGGGCGTG
  GGGCGGGCGG CTCCTAGCGG GCACCGTGGC TGGTGGGCGG CGAGCCGGCC CGAGAGAGCC
  R
  GAGAGGGAGC CCGAGGCAGC GGCGCCTCGC CGTCGCCGGC GACCCGCCGC CGGGGGTCCT
  CGTGCGGGCC GCGCTCTGGA GCTGCGGAGG AGGGTGGGCT GGCGGAGCCC ACCGGTGGGC
  GCGCGGGAGC TGGGCGGGCG CGTCCCGCGG GGAGCCGGGG GCCGTGGCGT TGAGTAGGGG
  AGCATGCTCA GGGGTCGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912474	MGP_WTSI_3_138190665	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242809820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912474	MGP_WTSI_3_138190665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138233462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	within coordinates
Eif4e	eukaryotic translation initiation factor 4E	Intron
Gm64814	predicted gene, 64814	1453 bp upstream
Mir1956	microRNA 1956	1216 bp downstream
Rr398072	regulatory region 398072	472 bp downstream
Rr586156	regulatory region 586156	1512 bp distal
Rr586157	regulatory region 586157	963 bp distal
Rr586158	regulatory region 586158	395 bp distal
Rr586159	regulatory region 586159	776 bp distal
Rr586160	regulatory region 586160	within coordinates
Rr586161	regulatory region 586161	36 bp distal
Tssr31989	transcription start site region 31989	1523 bp downstream
Tssr31990	transcription start site region 31990	1265 bp downstream
Tssr31991	transcription start site region 31991	1243 bp downstream
Tssr31992	transcription start site region 31992	1180 bp downstream
Tssr31993	transcription start site region 31993	1150 bp downstream
Tssr31994	transcription start site region 31994	1119 bp downstream
Tssr31995	transcription start site region 31995	1070 bp downstream
Tssr31996	transcription start site region 31996	412 bp downstream
Tssr31997	transcription start site region 31997	893 bp upstream
Tssr35898	transcription start site region 35898	1447 bp upstream
Tssr35899	transcription start site region 35899	738 bp upstream
Tssr35900	transcription start site region 35900	699 bp upstream