rs242777644 SNP Detail

Summary

• ID
  rs242777644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134602764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agaGGCAAT AGGCAGACAC ACACAGTTCA
  GCTTGTTTTG TTGAAGCTGC TAGCCCTGTG TGTTGGGGGT GGTTTTGTTG TCACTCTCTG
  TGTTGATACA AATAACTATT ACCATATGAT CTGAAGTCCC CTTACCAGAG GCTAGCACCT
  Y
  TGCCTGCCCT GCTCCTGAGT GCCTGGGAGA CTTAGTTCTT GTAAGGGGCT TTAGCTCTTA
  TCTGAAGATC CTGGACTTTG TTTGAAGCAT CCCTCCCTCC CCCCAGAGTT GCAAATGAAA
  GGCTTTCAGT GCGAGTCTCT CAGAGATTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319983878	CHEV_1_136571603	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242777644					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134602764 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	373 bp distal
Rr418974	regulatory region 418974	520 bp distal
Syt2	synaptotagmin II	Intron