rs242754572 SNP Detail

Summary

• ID
  rs242754572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125642288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAACACC TAAAGTGATT
  AAATTAACTG GATAATTATT AAAAACCCAG CTCAACTTGT AATGTCCACA TAACTTTTAC
  ACCCAGCTGT CACCTCCCTC AACCCCTGCC AGCTTCTTGA TAGATTTTTA TTCCAAAGAG
  TAAATAGGAG AGTCATAGAA AAATAAAATA GATTGGCCTT TATACAGTCA GAATAGCTTT
  Y
  TGAAAATAAA TTTGAGATTA AACAATGTTT GAAAACCACT CCTGATTTCT GTTAGCATAT
  GCACCTTTGA AGACAGGCTC TGGCAGTCTC CAGCATAGTC TTTTCTTGAC TAAAAGGTGT
  TCATAGTACT AAATGAATAA ATTTGCTAAA AATATAGATA ATTTTGGTTT TTTGCAGGAT
  GCTAATGTTC AAAGATTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320940418	CHEV_3_125551557	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242754572					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125642288 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	601 bp proximal
Rr584615	regulatory region 584615	701 bp proximal