rs242726803 SNP Detail

Summary

• ID
  rs242726803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88736927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTCATA TCTAATTGAA
  TGTTGACCTG TGTATCCTCT GTCATGGGCT GGACTTTAAA GGACTTTGTA ACAAATGAAA
  AGGGCAGAGT GGCTATTCTC TCTGTGACAA TCTATAAGGG TCTAGGGATC TGGAGACAAA
  GGAGATAGTC CCAATTTCTT TGGCTTCTGC TCAGACCAGA ATTTTTTTAA AAAATTAGAC
  Y
  ATTTAATTTC TTTAAAAAAA AACAAAAGGG CTGGAGAGAT AGCTTAGTGG TTAAGAGCAT
  TGACTGCTCT TCCAGAGGTC CTGAGTTCAA TTCTCAGCAA CCACATGGTG GCTCACAACC
  ATCCATAATG AGATCTGATG CCTTCTTCTG GTCTGTCTGA AGATGGTGAC AGTATACTCA
  TATACATAAA ATAATTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss358802507	MGP_WTSI_3_88633542	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs242726803					SNP	T	T	T	C	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358802507	MGP_WTSI_3_88633542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88736927 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	1599 bp upstream
Rr375322	regulatory region 375322	695 bp upstream
Rr579901	regulatory region 579901	1306 bp proximal
Rr579902	regulatory region 579902	1828 bp proximal
Rr579903	regulatory region 579903	1953 bp proximal