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rs242705590 SNP Detail
Summary
  • ID
    rs242705590
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:36666298 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGCAACGT GAGCCTGCCC
    TTTGAGAGGC AGGAGAAGGC GGAGAAGGCA GCATCTACAG CACCTTTTGT GTAGCCCTTT
    GTCTTGAGGT AGGAAGCAAC TTCATAGTTT TCTGAGAGGT CACTCCGACC TAAGGAAACA
    GAACAGCCAG CTAGTTGCTT TCTACATGCT GTAATTTGAA CATCCGAAAG TGGATGCTTT
    Y
    GGACATGCTG TAATTTGAAG TTCTTACATT GATAATTTAA GAAGAACAGA CCACATCATG
    GGAGTTTTAG TTTTTTTCAG TTTTAGGTTT TTTTTTTTCT CACTGAAATG TATATTCTTA
    TCAGTTAACT TTCATTTTGA TGAAATATGT CAGAGAAGGT CGGAATACAG GAAACAATCC
    AAAACGTTTA AAATATATAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357564842 MGP_WTSI_3_36511071 EVA_MGPV3 EVA_MGPV3 f SNP C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C T C C C C C C T C C C T C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242705590 SNP C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C T C C C C C C T C C C T C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357564842 MGP_WTSI_3_36511071 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36666298 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 Intron
Cpgi13088 CpG island 13088 947 bp proximal
Rr575383 regulatory region 575383 472 bp proximal
Rr575384 regulatory region 575384 1126 bp proximal
Rr575385 regulatory region 575385 1279 bp proximal
Tssr28874 transcription start site region 28874 1333 bp upstream
Tssr33039 transcription start site region 33039 1190 bp downstream
Tssr33040 transcription start site region 33040 1221 bp downstream
Tssr33041 transcription start site region 33041 1269 bp downstream
Tssr33042 transcription start site region 33042 1312 bp downstream
Tssr33043 transcription start site region 33043 1340 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory