rs242661136 SNP Detail

Summary

• ID
  rs242661136
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78388778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCGGG CTCCGGGCGA
  GCAAGCCCCG CACCCTCCCT TTGTTAGCCC CTATTGCTGA ACGGCAATCG AAGGCAGCAG
  GGCAACAACA ACAACAAAAA AAAAAAGACC AGAGTGCGGC CGGAGTAGCA CGCGGCGGCG
  GCGCGGACAC CACGCTAGGC CTCAAGCCGG ACACGAGGCG AGGCTACGGG GTTGCCGCTA
  S
  GCCTCGCACT CTGCCTCCCG CGCCGCCCGC AACTCGAAGC GGGAATGCTC GCAGCTAATC
  CCCGCCGACG ACAGCGGGGC CCGGCCCGCT CGGAGCAGGA CCTCCAGCTC GGCGGCCCGC
  GGAAGCCACA CCCGCCCCTC ACCTGCGTTC TGACGGCAAA CCCGTTGCGA AAAAGAACGT
  CCAAGGCGAC TGCCGCACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378158097	MGP_WTSI_9_78329303	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242661136					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378158097	MGP_WTSI_9_78329303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78388778 () rs orientation: forward

Symbol	Name	Function Class
Eef1a1	eukaryotic translation elongation factor 1 alpha 1	Intron
Rr401545	regulatory region 401545	210 bp upstream
Rr683563	regulatory region 683563	218 bp proximal
Tssr86288	transcription start site region 86288	1843 bp downstream
Tssr86289	transcription start site region 86289	517 bp upstream
Tssr86290	transcription start site region 86290	565 bp upstream
Tssr90645	transcription start site region 90645	714 bp upstream
Tssr90646	transcription start site region 90646	678 bp upstream
Tssr90647	transcription start site region 90647	161 bp downstream
Tssr90648	transcription start site region 90648	228 bp downstream