rs242645805 SNP Detail

Summary

• ID
  rs242645805
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150270240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTTGACA CCATTATGGA TGCACAGAGT
  TCAGGGTTTT CTCCATAGTA CTAGGCATAC CACTGAGTtg tgtacgtgtg tatgtgtacg
  tgtttgtatg tatgtatgtg tgtgtatgtg tgtctgcatg agtgtgtgtg tgtgtgtgtg
  W
  gtgtgtgtgt gtgtgtgaat gtAttttgag gtggggctca gtatgtatat ctctggttat
  cttgcaattc actaggaaga ccaagctggt ctcaaactca cagagatccc cctgcctctg
  cctcctgagt cctgggatta aaggtgtgcg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428584	CHEV_4_149559892	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242645805					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150270240 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	1232 bp downstream
Rr605217	regulatory region 605217	730 bp proximal
Rr605218	regulatory region 605218	937 bp proximal
Tssr40380	transcription start site region 40380	1633 bp upstream
Tssr40381	transcription start site region 40381	1642 bp upstream
Tssr40382	transcription start site region 40382	1660 bp upstream
Tssr40383	transcription start site region 40383	1674 bp upstream
Tssr44720	transcription start site region 44720	1607 bp downstream