rs242642213 SNP Detail

Summary

• ID
  rs242642213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151897582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTACGGCT TAACACAGAG GTGCACTTGA
  GCACTCCATA AGATGGAGCC AAATAACCTG CGTTTACACA AGTGGCTTTG TGGGAACTCA
  CACACCACTC CACCTACTCA AGAGTGGCCA GAGTACTGGC ACTGTCTCAA GAGCCTGCTC
  R
  CTCCTGAGAG GTCACACCAC GGCATTCTCA ACTGTGTGAC CATGGGGAAC AGACAGCCTC
  AACTATCCAC ATCTTGCTTC TTGTAATTAC TCACTCACTT TGTAAGAACT TGACACTGTG
  GATTTGCACG AATTACAACC ACAGGCAGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028364	CHEV_3_151854909	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242642213					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151897582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1756 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			384 bp upstream
Rr587481	regulatory region 587481			404 bp distal
Rr587482	regulatory region 587482			98 bp distal
Rr587483	regulatory region 587483			within coordinates
Rr587484	regulatory region 587484			1890 bp proximal
Tssr36163	transcription start site region 36163			1778 bp downstream
Tssr36164	transcription start site region 36164			1802 bp downstream
Tssr36165	transcription start site region 36165			1828 bp downstream
Tssr36166	transcription start site region 36166			1858 bp downstream
Tssr36167	transcription start site region 36167			1888 bp downstream