rs242627569 SNP Detail

Summary

• ID
  rs242627569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132738701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTCAT CCTCTGATGC
  CCGATTCCAC TCATTTTATT CTCAGACCCC GCCCCTGCGC TACCACCCGC AACCTTGGCG
  CAGCCAGAGC CCCGAGTAGG GGCCTCGGAA CGCCCGGAAT GTTCCTAACC CTTGAGGAGG
  ATCAGCAGTC CTAGATAAAA CGGGATTCAT CCGGGCCAGG GATACTCCGG CATAGGGTCC
  R
  CTCCGGGCCG CGCCGTCGGA GCAGCCGGAG TGGCCCCGCC CGCACAGCGC GCGGAGCGGC
  CGAACAGGGA CTACAAGTCC CGGCGTGCTC TGCGCGCGCT CCCCCCTGGG GTTCCGGATG
  GTGAGCAGCG AAGGTAAGGC GAGCTCGCAG AGGCAACGGC GGCGGCGGCG GAGACGGAGA
  GAGGCAGGCA GGCAGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338141	CHEV_4_132567305	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242627569					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132738701 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982	within coordinates
Rr601152	regulatory region 601152	1375 bp distal
Rr601154	regulatory region 601154	within coordinates
Rr601155	regulatory region 601155	279 bp proximal
Rr601156	regulatory region 601156	324 bp proximal
Rr601157	regulatory region 601157	825 bp proximal
Tssr39436	transcription start site region 39436	93 bp upstream
Tssr39437	transcription start site region 39437	128 bp upstream
Tssr39438	transcription start site region 39438	404 bp upstream