rs242580653 SNP Detail

Summary

• ID
  rs242580653
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72323611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA CACACACTAC AAAAACAAAA
  A
  TAAGGAAACC TAGGCACATT TAGAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321821435	CHEV_6_72296622	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242580653					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72323611 () rs orientation: forward

Symbol	Name	Function Class
0610030E20Rik	RIKEN cDNA 0610030E20 gene	689 bp upstream
Cpgi17538	CpG island 17538	1166 bp distal
Cpgi17539	CpG island 17539	532 bp proximal
Gm45051	predicted gene 45051	401 bp downstream
Rr368102	regulatory region 368102	1223 bp downstream
Rr632136	regulatory region 632136	954 bp distal
Rr632137	regulatory region 632137	within coordinates
Rr632138	regulatory region 632138	216 bp proximal
Tssr57117	transcription start site region 57117	673 bp upstream
Tssr57118	transcription start site region 57118	754 bp upstream
Tssr57119	transcription start site region 57119	1082 bp upstream
Tssr61434	transcription start site region 61434	1496 bp upstream
Tssr61435	transcription start site region 61435	1485 bp upstream
Tssr61436	transcription start site region 61436	1422 bp upstream
Tssr61437	transcription start site region 61437	1052 bp downstream
Tssr61438	transcription start site region 61438	1190 bp downstream
Usp39	ubiquitin specific peptidase 39	1421 bp upstream