rs242578991 SNP Detail

Summary

• ID
  rs242578991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19365712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGCCCGG CGTAATTCAC
  ACTTTGCAGC AGCGGACCCT GCGCCAACCA CGGCCGCCGC CACCGTGACG TCACGACGCC
  GCGCCGCATG CCCCGCGCCC CGCGCCGCCG CCGCGCCCAG GAGCCCGCCG GCTGTCCGGA
  CAGGGCTGCT CGCGTCCGCT GCGCTAGGCG CCGCGCCGCG CCGCGCCGCG CCCCGCGCCC
  S
  CCCGGCCCCT CCCGCCTCCC CGCAGCTCCC TCCCCGCAAC CCGCGGCGCG TGCGCAGGAG
  AGTTACGTGG GGCATCCTCG GGCGCACCGA CCCGGAGTTT GTTCGGCCTA CCGGATCGGC
  GCTGTTTCGT CCGACAGATC CAAAATGCCC AGAGCACCGG GCGCCCTCTC CGTGCTCCGC
  CCGTCGGGGC ACCGCGCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss357153130	MGP_WTSI_3_19211548	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	G	C	C	C	C	C	C	G	C	G	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs242578991					SNP	C	G	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	G	C	C	C	C	C	C	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357153130	MGP_WTSI_3_19211548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19365712 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	Coding-NonSynonymous
Gm66414	predicted gene, 66414	89 bp upstream
Pde7a	phosphodiesterase 7A	226 bp upstream
Rr573969	regulatory region 573969	237 bp distal
Rr573970	regulatory region 573970	within coordinates
Rr573971	regulatory region 573971	100 bp proximal
Tssr28510	transcription start site region 28510	843 bp downstream
Tssr28511	transcription start site region 28511	689 bp downstream
Tssr28512	transcription start site region 28512	75 bp downstream
Tssr28513	transcription start site region 28513	53 bp downstream
Tssr32696	transcription start site region 32696	285 bp upstream
Tssr32697	transcription start site region 32697	234 bp upstream
Tssr32698	transcription start site region 32698	204 bp upstream
Tssr32699	transcription start site region 32699	170 bp upstream
Tssr32700	transcription start site region 32700	145 bp upstream
Tssr32701	transcription start site region 32701	644 bp downstream