rs242577925 SNP Detail

Summary

• ID
  rs242577925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108422683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCAAGAC TTTTGTTTGT TTGAAGTCAT
  ATTAGCTGTT TAGTTATTTC CATGGGGAGT CCATTTCTGA AGTCATGAAA ATAATTATTA
  AAAAATAGTA ATGATTGGAC AAGTGAGCCA TAGGATGACA CCCGTGTAGC AGGTACTCGG
  Y
  AATGAAAGTA TGCTAAGCCG GTAAGCAGTC AGTAGCTAGG TCCatctcac acacactagg
  ctgaatgaaa gaagtcagtg agtgtacaga cagcaacaca ctctaaattg tatctatctg
  gttctttgga aagacaaatg gtgatgaaga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321892713	CHEV_6_108395716	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242577925					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108422683 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	332 bp distal
Rr636108	regulatory region 636108	1192 bp proximal
Rr636109	regulatory region 636109	1538 bp proximal