rs242573689 SNP Detail

Summary

• ID
  rs242573689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95730161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCAAATT ACCCTCTGGC TCCTCCCCTC
  TTTGGAGGGA CTCCCATGGC CAGGGAAGAT GACCCTGGAG GCACCCTTAT CAAGGGAGCA
  CTTCCCTTAC CTAGATCCCA CCCCCCAGGT CCTGAGACTA GGTCATATGC TATGGAGTTC
  Y
  CAAACCTTGT TTCTCACCTG GGCCAACCAT CTCATTCTTC TTGCCCTCAG CACACATCAG
  ATACCAACTT CCCAGTAACA CTTGCACTTT TACTAAAATC TGTTATATTG GCTCATTTCT
  CTTCTCCATC CCTGTCTCTC CAAGGTTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321215901	CHEV_4_95508615	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242573689					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95730161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595473	regulatory region 595473			736 bp distal