rs242560127 SNP Detail

Summary

• ID
  rs242560127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108868827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGCCTA CACTGAAGTG
  TTCCAGCTGC CCAGTGTGCT TTGCTGCTTG TTGCTAGGCA ACACTACTGA CCCTTCCTGG
  GCTCACATAA GGCAGCGAGG GAAGTTGAGA CATAGTCTGT GTTCTGAGGG GCTGCATGCA
  TACTTGGTCA TCTCCTAAGG AACCAGAACA AACCGCCTGA GCCGCCTGGC AGAGTCTGGC
  Y
  TCCCTGAGAT GTGTTCCGGG GCTGCAGAGC CATTCCCTGG GCAAGCGCTC TGTGAACCCT
  TATTCTTAAA CTGAATCTTC AAGGGTTCAT AATCAGTGGA TTATGAAATC AGAGGGTTTT
  CAGAGAGAAA AATCCTCATT ACATAAGCAG TGTCAAGCAG CTGCCCTCTT AAGTCTCTTA
  GCTGAATCCG CCAGATCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867105	CHEV_3_108764429	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242560127					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108868827 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	952 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	within coordinates