rs242542948 SNP Detail

Summary

• ID
  rs242542948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAACAG AGTTCATATT
  TTATGAACTG GTGCACAGTG CCAACTGCTG TCATAGTTAC TGCCATCATC ATTGTATCCC
  TGCAAACTTC TCAGACGTCC ACCAGCCTTT GCAGAGTTTG GTACCTAGAA TCTCCTTTTC
  TTTATCTGTT TCAGTATACA ATTGTGATTT TCTGCTCAAC TCCTTGGTTA CTTTCAGGAA
  S
  CTTTTTCTGA TACATCCCTC CCACATCCAC TCAGGAATAT GTCTTTTGCT TTTACTTCCT
  TATTTTTTGC ATCCTAGGAT TAGCAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAAATTACCC TTCCTGGGTC TCTGTTGCCC AGAGTAAACT GGGTACATCA GTTTCTGGCT
  CTGTTTCTTA GATTTTTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368651735	MGP_WTSI_6_67487420	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	C	G	G	G	G	C	C	G	G	G	G	C	C	G	C	C	G	G	C	G	C	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242542948					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	C	G	G	G	G	C	C	G	G	G	G	C	C	G	C	C	G	G	C	G	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368651735	MGP_WTSI_6_67487420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514410 () rs orientation: forward

Symbol	Name	Function Class
Gm42889	predicted gene 42889	within coordinates
Rr631670	regulatory region 631670	1620 bp distal
Rr631671	regulatory region 631671	1350 bp distal
Rr631672	regulatory region 631672	1447 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1630 bp upstream
Tssr61257	transcription start site region 61257	1729 bp upstream
Tssr61258	transcription start site region 61258	1624 bp upstream
Tssr61259	transcription start site region 61259	1556 bp upstream