rs242527449 SNP Detail

Summary

• ID
  rs242527449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttacacact gccgaggttg gctttgaact
  cactgtgtag cacaggcaac cttggattat tgtatgtgta tacaagtacg aatgctcact
  gtgtgcatgc ctggcgcctt ggggttcaga agagggggtc agatctctgg aactggagtt
  Y
  ggagatgatt gtgagccact gtgtggatgc tgggaacaaa acctgggtcc tttccaagag
  tgtccagggc gcttaatccc tgtgccatct ctccatcctc tagtcttagt ccttaaccct
  ctctcagcct tctgagtggt aggtatttct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334506	CHEV_4_132120763	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242527449					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292159 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	771 bp distal
Rr601016	regulatory region 601016	551 bp distal
Rr601017	regulatory region 601017	723 bp distal
Rr601018	regulatory region 601018	568 bp distal
Rr601019	regulatory region 601019	643 bp proximal
Tssr39381	transcription start site region 39381	1367 bp downstream
Tssr39382	transcription start site region 39382	1338 bp downstream
Tssr39383	transcription start site region 39383	1255 bp downstream
Tssr39384	transcription start site region 39384	1220 bp downstream
Tssr39385	transcription start site region 39385	1111 bp downstream
Tssr39386	transcription start site region 39386	772 bp downstream
Tssr39387	transcription start site region 39387	755 bp downstream
Tssr39388	transcription start site region 39388	638 bp downstream
Tssr39389	transcription start site region 39389	512 bp upstream