rs242504479 SNP Detail

Summary

• ID
  rs242504479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:92757725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCTGG GGACCTGCCA
  GTCCTTACAT GCTCCCCTCA GGCTTCCTTA GTCAGCCCCT GGGCTGCTCG CATACATGGT
  TCCTCAAGAT TATGGAGACT CCAGTATGGA GAGGAGCACC ACTTTGGAGC ACTATCTTGG
  CTGCCAGTAG TATGACCTGT GGGAAAGTGC TATGCTGTTC TTTTGCAGGT ACAGTGATAA
  R
  GATTTCCCTA GAAAAGACAG CCAACCTATA CAGCATCATA GCAAAGGCCA TAGCCTAAAG
  ACCTGCCATT TTGGGGTCCA GAAATGGCTC AGACACTGAG CCTACCCCAA GGAACTATCT
  AGGCTGGTCA ACTTACAAAG AGGCATTCAG TGGTGATGGC ATGTTGAGAG GCCAGAACAC
  ATGGGGAGCA CAGAAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350507320	MGP_WTSI_1_94726580	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242504479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350507320	MGP_WTSI_1_94726580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:92757725 () rs orientation: forward

Symbol	Name	Function Class
Gm29481	predicted gene 29481	within coordinates
Gm69848	predicted gene, 69848	within coordinates
Gpc1	glypican 1	1642 bp upstream
Rr415863	regulatory region 415863	1152 bp proximal
Tssr8123	transcription start site region 8123	1331 bp upstream
Tssr8124	transcription start site region 8124	1490 bp upstream
Tssr8125	transcription start site region 8125	1611 bp upstream
Tssr8126	transcription start site region 8126	1647 bp upstream
Tssr8127	transcription start site region 8127	1727 bp upstream
Tssr8128	transcription start site region 8128	1765 bp upstream
Tssr8129	transcription start site region 8129	1789 bp upstream
Tssr8130	transcription start site region 8130	1816 bp upstream