rs242497519 SNP Detail

Summary

• ID
  rs242497519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13600068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCACTG TGTAATGTTC
  TGATTTGAAT CATTTGAATA ACTGCAACTT GTGTAGAACC AGTGGGTGTT TCCCAAATTA
  TGTTTCATAT GAATGTTATT TGCACTTTAG CAGAAGTCCA CGGAGAACTC ACACATACAG
  GTTAAAGGGT GTGTGAGATT GAGAGACAAG GGTTTCATAG ACACGTGTAG AAATGATGCT
  Y
  TTTCAGTACT ATTATTATTT CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTTCCTC
  TTCCCTTTCC TTCTCTTCTT CCTCCTCCTC TTCTTTTTTG CTCTAAGTAT AGTTACACTT
  CACAGAATAC TGGGTAGAGT AAAGGGTTTG GAATCTTTCT ATAATCAATT AAGCAAAAAC
  TATGCTGAAA AGTCTAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321748391	CHEV_6_13550069	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242497519					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13600068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626572	regulatory region 626572			1454 bp proximal
Tmem168	transmembrane protein 168			Intron
				Noncoding-Transcript-Variant