rs242489973 SNP Detail

Summary

• ID
  rs242489973
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCAGAA TTTGGGGGAA
  CCAACATACA GGCAGTAGCA GGGTATCTGC TCTTTGGAGG CTGAAGGAGA GAAGTCATTT
  CCTCACCCTT TCCTCGTGGA GACTGACGAC ACTCCTTGGC TTGTGAATAT TCTCACAGCA
  AGACTTCCTG GCTGTGCCTC TCCTGCCTTC CTTTTACCTA CAGAGACCCT TAGAATATTA
  M
  ATTTGTGCCT AACTAGTAGC ACAGGATAAT CTTCCGGGCA CAAAATACTT GATCACATCT
  GCACAATCTG TCTCCAAAAG AAGGGGTATG GATATTTCAA AAAGCCATTT ATTCAGCCTG
  CCATGAGGGG TATAGAGTCA TGGAAGATGG TCAAGAAAGG TATCTGGCTT TTAAAGTTAC
  ATGCTACATC ATTACATAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100066	CHEV_4_44087733	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242489973					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1794 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591150	regulatory region 591150	1597 bp distal
Rr591151	regulatory region 591151	1864 bp distal
Rr591152	regulatory region 591152	675 bp distal
Tssr41485	transcription start site region 41485	1840 bp upstream