rs242475596 SNP Detail

Summary

• ID
  rs242475596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95787001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATCA CATCTCGGGT
  GTAAGTGCCA GGTCTTGTAG CACCTCCAAG GACAGATTCA CCTCTTCCTG AATAATTGGG
  CTTGATTCAC ATGATGAGCT GACATAAGCT TTGCAGTTCC AGGACGGATC CTTCTCTTGA
  TCTTGTTCTC ACTGTTGTCC ACTGAACAGC GGGAGAAGCT GAAGCTCTCA TTCCTGGTCA
  Y
  CCCCCTTGCC CCCCCCGCCC CCCCCCCCCG TGTTCCTGCA AGGAGAAGGC AGCTCTGTGC
  AAATAGTCTC TAGATTCTCA GGGCCCAGGA GCAGCCCCTT GGGGGTAGAG GAATTCCATT
  ACTCCACCTG GTGTCGCTTG CTCTCCTCTG GAGCCGGAAA GGGCCTCAGG AGACAGCTGT
  GGGGTCACCT CGGCTGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss362490639	MGP_WTSI_4_95565455	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs242475596					SNP	C	C	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362490639	MGP_WTSI_4_95565455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95787001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			461 bp upstream
Rr595486	regulatory region 595486			1725 bp distal
Rr595487	regulatory region 595487			1435 bp distal
Rr595488	regulatory region 595488			786 bp distal
Rr595489	regulatory region 595489			1279 bp distal
Rr595490	regulatory region 595490			1646 bp proximal