rs242458919 SNP Detail

Summary

• ID
  rs242458919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5510220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCCCAT GACTATTCCA
  ACAGCATCCA AGTAGGAGTC TAATGTGCCT TTTCTAAATT CTGTTGCCCA AGTGGAAAAA
  CAGGTTGTGA AGTGCAGTAG GGGCCACCCA GTACTGACTG AGAGGAACTG AATGTCTTGC
  AGGCTCATAT ATTTATACTA GATAAATAGA ATACATAACA GAAAGGGGAG AGATTCTTTT
  W
  AAAAATCTAT TACTATAAAA AGAACCTGTG AGTTTTCTTA CTACTAGTTC TAGACTAGAG
  CAGTAGCCCA TCTTCAGGCC AGGCTACTAA AGACACTTCA AAACATGCTA TAAACTCCCG
  ACTTAGCAAA CACTATAGCC CGTGTTCCAC ATTGTGAGCT GTATGGAGCA AGTGGGCCAT
  GGTGTCTGTT TTCTAGGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729376	CHEV_6_5460220	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242458919					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5510220 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	917 bp upstream
Tssr54862	transcription start site region 54862	928 bp upstream