rs242450076 SNP Detail

Summary

• ID
  rs242450076
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74521667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAGGAA GCTCCCAGCG
  GCCGGTCCTC AAAGGTCAGG GTGTGGTTAC TCTCAGAGTC AAGGCTCCAG GAGCTCGTGG
  GTGCCGATTC CCCCCCCCCC TTAGTTCTAG CAGAAAGATC TAAGGAGGGG GTAGCTACGG
  GCTGGAACCA TCATCCGAGC TTCGGGTTTG CCCAGCTGCG TGGTGGCCTC TCGACCCTCG
  S
  GGCCCTATTC GCCAGTGCTT CCCCGACACC TTGGTCCAAT CTTTGCACTG AAGATTTTCA
  CACAGCCCCC TTTGGAACCC TAGGGAGGGA TGTTTCCGAA CTAGAGAAAT CGGACTCACC
  TTCCTGGCTG CCCAGTACTA AATTAACCAG CCCGCGCCCC TATCCCTTCC TGGGAACCGG
  CCCTCTTGGG CGCGTTCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484907	MGP_WTSI_2_74529380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242450076					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484907	MGP_WTSI_2_74529380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74521667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11796	CpG island 11796	within coordinates
Cpgi11797	CpG island 11797	1018 bp proximal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd10	homeobox D10	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr44605	regulatory region 44605	334 bp proximal
Rr373365	regulatory region 373365	559 bp downstream
Rr559350	regulatory region 559350	818 bp distal
Rr559351	regulatory region 559351	within coordinates
Rr559352	regulatory region 559352	441 bp proximal
Rr559353	regulatory region 559353	762 bp proximal
Tssr18406	transcription start site region 18406	537 bp upstream
Tssr18407	transcription start site region 18407	562 bp upstream
Tssr18408	transcription start site region 18408	590 bp upstream
Tssr18409	transcription start site region 18409	618 bp upstream
Tssr18410	transcription start site region 18410	642 bp upstream
Tssr18411	transcription start site region 18411	728 bp upstream
Tssr24622	transcription start site region 24622	435 bp downstream