rs242428146 SNP Detail

Summary

• ID
  rs242428146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTGGAT TCACTGGTCC
  CAAGGACCAA ATGAGGCCTG AGAAGTCACC AGGGGGAAGG AGACAGAGGG GAAGAGAAAG
  AGAAAGACGG AGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA CATGCACAGG
  GAGAAATGGA AAAGACTTAT TGGGGGTTAA GAGCACTGAC TGCTCTTCCC AAGGTCTTGA
  R
  TTCAGTTCCC AGCACCCACG TGGCAGCTTG AAACTGTCTG GTGCCGTCTT CTGGTGTGCA
  GATGTACATA CAGCAATAAC CCCCCCCACA CACACACACA TAAATATTGC AACAGAAACG
  ACTATGTTCA CCCAAAATTC AAGAGACAAG TCATTTCATG TATGGGAGGA GCACTATGGT
  CGAGAAGCAC ATCTCATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934510	MGP_WTSI_10_75415346	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242428146					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934510	MGP_WTSI_10_75415346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1272 bp distal
Cpgi1739	CpG island 1739	1793 bp proximal
Gm5134	predicted gene 5134	1913 bp upstream
Gm40698	predicted gene, 40698	1249 bp downstream
Gm65908	predicted gene, 65908	1654 bp upstream
Rr402000	regulatory region 402000	746 bp downstream
Rr434189	regulatory region 434189	1686 bp distal
Rr434190	regulatory region 434190	1185 bp distal
Rr434191	regulatory region 434191	1494 bp distal
Rr434192	regulatory region 434192	817 bp distal
Rr434193	regulatory region 434193	599 bp distal
Rr434194	regulatory region 434194	1515 bp proximal
Rr434195	regulatory region 434195	1993 bp proximal
Tssr94163	transcription start site region 94163	1920 bp upstream