rs242425662 SNP Detail

Summary

• ID
  rs242425662
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106645644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTTAA AACTCCATTC
  ATTTCTTCAG GGTGATGGGA CCATCTCATC TCTCATGACA TGTAAAAACA AGACAAGGCC
  ATTTAAAGAA GGAAAGAAAA CACAGAGCAT CGAGGGGTGT GGCCCGGTGG GTGGCATGCC
  TGCCTAATAT CCAGAAAGCC CTGGGTTTGA TCCCCACCAC TGCATGAAAC GGTTGTGGTA
  K
  TATCCCAACA TTTGGAAGAT GGAGACAGGA GGATCAGAAA TTCAGGGTCC ATCCCAGCTA
  TAAAGCAAGT TTAAGGCCAG CCTAGGCTAC ATGAGACCCT GTCTCAAAAA GAAAAGAAAA
  CGATAGGAGA GGGGATATGA TGGAGGGAAA AGGTCCTTTT CTAATCTGAG GCAGTAGTGA
  GTGGGAGGGT TCCTGCGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321247241	CHEV_4_106461052	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242425662					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106645644 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	1622 bp distal
Rr596809	regulatory region 596809	183 bp distal
Rr596810	regulatory region 596810	873 bp distal
Rr596811	regulatory region 596811	1256 bp proximal
Rr596812	regulatory region 596812	1967 bp proximal