rs242365413 SNP Detail

Summary

• ID
  rs242365413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119458518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGCCTTCTCA TCCACTTTGT AGCCAGTCTC CTCTCATCGC TGCCCCTTTG
  S
  TATCTGCAAC TCACTTCGGT TCTGGTTTTG TTCTTGTTCT GTTTTTTTGT           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928130	CHEV_6_119431575	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242365413					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119458518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	258 bp distal
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637691	regulatory region 637691	1879 bp distal
Rr637692	regulatory region 637692	1143 bp distal
Rr637693	regulatory region 637693	293 bp proximal
Rr637694	regulatory region 637694	1322 bp proximal
Rr637695	regulatory region 637695	1609 bp proximal
Tssr58505	transcription start site region 58505	1762 bp downstream
Tssr58506	transcription start site region 58506	163 bp downstream
Tssr58507	transcription start site region 58507	69 bp downstream
Tssr58508	transcription start site region 58508	16 bp downstream
Tssr58509	transcription start site region 58509	within coordinates
Tssr58510	transcription start site region 58510	381 bp upstream
Tssr62722	transcription start site region 62722	1063 bp upstream
Tssr62723	transcription start site region 62723	within coordinates
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron